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gatk3的最后一个经典版本3.8
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Java 95.8%
Scala 3.8%
R 0.2%
JavaScript 0.1%
 
 
 
 
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hanna d9b8fa2acc Up the memory required for integrationtests until we can figure out why 
memory isn't being freed correctly when multiple integration tests run as 
part of a single class.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4328 348d0f76-0448-11de-a6fe-93d51630548a
 		2010-09-22 18:54:24 +00:00
R improvements to the report code 2010-09-15 00:45:13 +00:00
archive Cleaning up playground utils and tests 2010-08-27 01:25:47 +00:00
c Reduce file handle usage. 2010-01-05 18:03:01 +00:00
doc removing the custom reflections library from the libs, and adding a release version. Hopefully this will fix the problem Menachem has been seeing with random JVM crashes. Also 2010-08-19 00:42:37 +00:00
java Disable VCF header output in the Beagle integrationtest. 2010-09-22 16:50:03 +00:00
matlab Another matlab script -- this time for making power and coverage plots over a specific gene region. Lots of fun file reading, string manipulation, and exploration of the set() function 2009-11-30 20:02:25 +00:00
packages Fix for DoC issue with multiplexer -- will retire use of multiplexer when 2010-09-07 00:44:07 +00:00
perl - Update DoC to support output to /dev/null. 2010-09-08 23:43:18 +00:00
python Do this the right way 2010-09-19 04:30:48 +00:00
ruby accidentally commited an old tool 2010-08-25 15:42:02 +00:00
scala Re-enabling indel cleaning, explicitly calling fix mates in the case where indel cleaning is not scatter/gathered 2010-09-21 20:37:49 +00:00
settings The battle is over. Picard is revved. 2010-09-03 05:28:01 +00:00
shell Fixed header generation when lines contain spaces. 2010-09-17 17:14:59 +00:00
testdata and add changes to the vcf used in testing 2010-06-25 02:56:02 +00:00
LICENSE Adding a license to the root directory in case BOSC checks for one. Has the 2010-04-20 16:04:29 +00:00
build.xml Up the memory required for integrationtests until we can figure out why 2010-09-22 18:54:24 +00:00
ivy.xml Adding the --sample-metadata (-SM) command line argument and associated functionality. This is something Matt and I have been working on for a while. Basically, it allows you to integrate sample metadata into an analysis, by including a sample file. More detailed documentation is on the wiki: http://www.broadinstitute.org/gsa/wiki/index.php/Adding_Sample_data_to_an_analysis 2010-09-15 11:50:22 +00:00