hanna d8fbb2b62c Refactoring; make a better home for the MalformedReadFilteringIterator. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1194 348d0f76-0448-11de-a6fe-93d51630548a		2009-07-08 16:54:20 +00:00
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datasources	Refactoring; make a better home for the MalformedReadFilteringIterator.	2009-07-08 16:54:20 +00:00
executive	Added IterableLocusContextQueue and test. Cleaned up tests, adding BaseTest where it didn't exist. Enhanced test runner to run only classes ending in ...Test.java, so that utility classes can sit alongside the tests but won't be run by JUnit.	2009-05-13 21:32:05 +00:00
iterators	changes to fix and test the interval based traversals	2009-06-25 17:54:15 +00:00
refdata	Two-tailed HardyWeinberg test implemented. VariantEval now separate violations from summary outputs for clarity; Fixing problems with CovariateCounterTest and TabularRodTest	2009-07-06 22:02:04 +00:00
traversals	changes to fix and test the interval based traversals	2009-06-25 17:54:15 +00:00
walkers	Two-tailed HardyWeinberg test implemented. VariantEval now separate violations from summary outputs for clarity; Fixing problems with CovariateCounterTest and TabularRodTest	2009-07-06 22:02:04 +00:00
GATKArgumentCollectionTest.java	Prep for documenting command-line arguments: delete some arguments that don't make sense any more given	2009-07-01 18:23:35 +00:00
OutputTrackerTest.java	Added IterableLocusContextQueue and test. Cleaned up tests, adding BaseTest where it didn't exist. Enhanced test runner to run only classes ending in ...Test.java, so that utility classes can sit alongside the tests but won't be run by JUnit.	2009-05-13 21:32:05 +00:00