gatk3的最后一个经典版本3.8

Eric Banks d8f6bc232b Adding support for non-haplotype-based comparison of multi-allelics (i.e. we do compare alleles and test for partial equality, but we don't construct haplotypes for this yet).		2012-04-27 13:43:52 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
public	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-04-27 10:49:45 -04:00
settings	Rev. tribble to fix BED codec bug in tribble 51	2012-01-17 16:40:26 -05:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	Added function to get bases from the current base forward in the window in ReferenceContext	2012-04-06 16:07:46 -04:00
ivy.xml	S3 upload now directly creates the XML report in memory and puts that in S3	2012-01-29 15:14:58 -05:00