depristo d9671dffba Documentation for VariantContext. Please read it and start using it. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2756 348d0f76-0448-11de-a6fe-93d51630548a		2010-02-01 17:49:51 +00:00
..
alignment	Support for ad-hoc reference sequences. Also reenabled BWA/Java integration test, which was commented out	2010-01-02 20:19:14 +00:00
gatk	Moved old EM model to archive	2010-02-01 02:55:32 +00:00
oneoffprojects/variantcontext	Documentation for VariantContext. Please read it and start using it.	2010-02-01 17:49:51 +00:00
playground/gatk/walkers	Just like VariantFiltration but lets you match info fields out of the VCF instead of annotating them.	2010-01-29 15:38:03 +00:00
utils	V5 improvements to VariantContext. Now fully supports genotypes. Filtering enabled. Significant tests throughout system. Support for rebuilding variant contexts from subsets of genotypes. Some code cleanup around repository	2010-01-28 18:37:17 +00:00
BaseTest.java	moved hard-coded file paths to the oneKGLocation, validationDataLocation, and seqLocation variables setup in the BaseTest.	2009-12-29 07:40:48 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	Added the capability to allow expressions in an integration test command (i.e. -filter 'foo') by escaping them in the command.	2009-11-24 02:34:48 +00:00