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VectorPairHMM
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Update pom versions to mark the start of GATK 3.5 development
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2015-05-15 00:44:54 -04:00 |
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c
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After renaming the packages, instead of updating the JNI library used for testing bwa, moving the classes to the archive.
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2014-05-19 17:36:41 -04:00 |
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chainFiles
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The contig is named MT not M in b36. Delivers PT68890442.
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2014-04-08 10:03:47 -04:00 |
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doc
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Updated readme in public/doc to just point to the website
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2015-03-12 11:52:48 -04:00 |
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external-example
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Update pom versions to mark the start of GATK 3.5 development
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2015-05-15 00:44:54 -04:00 |
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gatk-engine
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Merge pull request #1019 from broadinstitute/rhl_var_index_param_gz
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2015-06-17 14:30:20 -04:00 |
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gatk-queue
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fix typo in queue arguments
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2015-06-05 17:06:23 -04:00 |
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gatk-queue-extensions-generator
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Update pom versions to mark the start of GATK 3.5 development
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2015-05-15 00:44:54 -04:00 |
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gatk-queue-extensions-public
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Update pom versions to mark the start of GATK 3.5 development
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2015-05-15 00:44:54 -04:00 |
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gatk-root
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Add spannning deletions allele
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2015-06-12 16:43:06 -04:00 |
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gatk-tools-public
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Indexing parameters not required if output file has the g.vcf.gz extensionv
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2015-06-13 11:46:56 -04:00 |
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gatk-utils
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Added else clause to handle symbolic alleles
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2015-06-17 10:52:56 -04:00 |
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gsalib
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Update pom versions to mark the start of GATK 3.5 development
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2015-05-15 00:44:54 -04:00 |
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java/config
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Refactored maven directories and java packages replacing "sting" with "gatk".
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2014-05-19 17:36:39 -04:00 |
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package-tests
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Update pom versions to mark the start of GATK 3.5 development
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2015-05-15 00:44:54 -04:00 |
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perl
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Fixing the liftover script to not require strict VCF header validation.
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2013-11-07 09:02:17 -05:00 |
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repo
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Rev htsjdk to version 1.132 and picard to version 1.131, and switch to using the versions in maven central
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2015-05-14 15:26:23 -04:00 |
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src/main
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Added faster built executable, non-packaged jars.
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2014-11-05 00:30:46 +08:00 |
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pom.xml
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Update pom versions to mark the start of GATK 3.5 development
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2015-05-15 00:44:54 -04:00 |
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