Valentin Ruano-Rubio 1f8282633b Removed plots generation from the BaseRecalibration software ... Improved AnalyzeCovariates (AC) integration test. Renamed AC test files ending with .grp to .table Implementation: * Removed RECAL_PDF/CSV_FILE from RecalibrationArgumentCollection (RAC). Updated rest of the code accordingly. * Fixed BQSRIntegrationTest to work with new changes		2013-06-19 14:47:56 -04:00
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scripts/org/broadinstitute/sting	Removed plots generation from the BaseRecalibration software	2013-06-19 14:47:56 -04:00
src/org/broadinstitute/sting/utils/R/gsalib	Updating gsalib for R-3.0 compatibility	2013-05-18 12:43:38 -04:00