Ryan Poplin d84970ff75 BQSR bug fix from @nsubtil ... -- Ignore SNP matches that lie outside the clipped read window -- This fixes an issue where GATK would skip the entire read if a SNP is entirely contained within a sequencing adapter.		2014-12-17 10:04:37 -05:00
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src	BQSR bug fix from @nsubtil	2014-12-17 10:04:37 -05:00
pom.xml	Faster builds, with updates to documentation generation.	2014-11-05 00:32:23 +08:00