ebanks d84444200b The Unified Genotyper now sorts the sample names in the vcf that it outputs. ... [There was no reason to enforce that every VCF being output from the GATK should have the samples sorted, since someone might want them ordered non-alphabetically] git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2102 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-20 16:13:18 +00:00
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gatk	The Unified Genotyper now sorts the sample names in the vcf that it outputs.	2009-11-20 16:13:18 +00:00
playground/gatk/walkers	Added the old recalibrator integration tests to the refactored recalibrator sitting in playground.	2009-11-19 22:43:28 +00:00
utils	Fixed the sample mix-up bug Kiran discovered, and added a unit test in the VCF reader class (Thanks for the good example files Kiran). Also renamed the toStringRepresentation function to toStringEncoding, and added a matching method in VCFGenotypeRecord.	2009-11-19 18:17:47 +00:00
BaseTest.java	Added some code to change the instrumentation for tests.	2009-05-20 05:15:27 +00:00
TrivialInstrumenter.java	fixed a bunch of comments and license headers.	2009-06-10 14:10:46 +00:00
WalkerTest.java	Enabling correct high-performance ROD walker and moved VariantEval over to it. Performance improvements in variantEval in general. See wiki for full description	2009-10-20 23:31:13 +00:00