kshakir d7f55574e2 Re-enabling aligner integration test now that we're back to having more than 1 or 2GB memory. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4241 348d0f76-0448-11de-a6fe-93d51630548a		2010-09-09 15:09:48 +00:00
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config	Provide a default logger, some config settings, and some doc updates.	2009-04-29 02:06:05 +00:00
src	Initial implementation of UserError exceptions and error message overhaul. UserErrors and their subclasses UserError.MalFormedBam for example should be used when the GATK detects errors on part of the user. The output for errors is now much clearer and hopefully will reduce GS posts. Please start using UserError and its subclasses in your code. I've replace some, but not all, of the StingExceptions in the GATK with UserError where appropriate.	2010-09-09 11:32:20 +00:00
test	Re-enabling aligner integration test now that we're back to having more than 1 or 2GB memory.	2010-09-09 15:09:48 +00:00