gatk-3.8/java
ebanks d7e4cd4c82 Moving some useful and stable walkers to core:
- ClipReads
- PrintRODs (generalized to print all RODs that are Variations)
- FixBAMSortOrderTag (added documentation to walker so that people know what it does and why)



git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2238 348d0f76-0448-11de-a6fe-93d51630548a
2009-12-03 03:00:45 +00:00
..
config Provide a default logger, some config settings, and some doc updates. 2009-04-29 02:06:05 +00:00
src/org/broadinstitute/sting Moving some useful and stable walkers to core: 2009-12-03 03:00:45 +00:00
test/org/broadinstitute/sting commenting out some broken integration tests, to be uncommented if needed. 2009-12-02 23:13:24 +00:00