Karthik Gururaj e8a5022777 1. Added support for JNI integration for LoglessCaching PairHMM AVX ... implementation. 2. Contains lots of debug code 3. Only invokes JNI for subComputeReadLikelihoodGivenHaplotypeLog10		2014-01-15 11:07:09 -08:00
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java	1. Added support for JNI integration for LoglessCaching PairHMM AVX	2014-01-15 11:07:09 -08:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples	Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest	2013-02-27 04:45:53 -05:00