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gatk-3.8/PairHMM_JNI
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Karthik Gururaj d7ba1f1c28 1. Moved computeLikelihoods from PairHMM to native implementation 
2. Disabled debug - debug code still left (hopefully, not part of
bytecode)
3. Added directory PairHMM_JNI in the root which holds the C++ library
that contains the PairHMM AVX implementation. See PairHMM_JNI/JNI_README
first
 		2014-01-16 21:36:15 -08:00
..
.gitignore Renamed directory 2014-01-16 20:28:50 -08:00
JNI_README 1. Moved computeLikelihoods from PairHMM to native implementation 2014-01-16 21:36:15 -08:00
Makefile Renamed directory 2014-01-16 20:28:50 -08:00
convert_char.cc Renamed directory 2014-01-16 20:28:50 -08:00
define-double.h Renamed directory 2014-01-16 20:28:50 -08:00
define-float.h Renamed directory 2014-01-16 20:28:50 -08:00
hmm_mask.cc Renamed directory 2014-01-16 20:28:50 -08:00
libJNILoglessPairHMM.so 1. Moved computeLikelihoods from PairHMM to native implementation 2014-01-16 21:36:15 -08:00
org_broadinstitute_sting_utils_pairhmm_JNILoglessPairHMM.cc Renamed directory 2014-01-16 20:28:50 -08:00
org_broadinstitute_sting_utils_pairhmm_JNILoglessPairHMM.h Renamed directory 2014-01-16 20:28:50 -08:00
pairhmm-1-base.cc Renamed directory 2014-01-16 20:28:50 -08:00
pairhmm-template-kernel.cc Renamed directory 2014-01-16 20:28:50 -08:00
pairhmm-template-main.cc Renamed directory 2014-01-16 20:28:50 -08:00
run.sh 1. Moved computeLikelihoods from PairHMM to native implementation 2014-01-16 21:36:15 -08:00
shift_template.c Renamed directory 2014-01-16 20:28:50 -08:00
template.h Renamed directory 2014-01-16 20:28:50 -08:00