chartl f7d1b8f5de CoverageStatistics has now replaced DepthOfCoverage -- old DoC is in the archive. ... Also, I can't be bothered to fix the spelling of "oldepthofcoverage" to contain the necessary number of D's. Be content that it does, however, contain the requisite number of O's. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@3109 348d0f76-0448-11de-a6fe-93d51630548a		2010-04-01 16:27:23 +00:00
..
annotator	The VariantAnnotator can now officially annotate genotype (FORMAT) fields.	2010-03-19 03:30:14 +00:00
concordance	Fixing/cleaning up the vcf merge util	2010-03-19 15:13:32 +00:00
fasta	Fix off-by-one error in original implementation of read sharding. Tested by	2010-03-06 18:52:53 +00:00
filters	Moving VariantFiltration over to use VariantContext.	2010-03-19 18:35:23 +00:00
genotyper	Deleting the pooled calcluation model -- no longer supported.	2010-03-29 11:44:27 +00:00
indels	Added test of Nway cleaning for Matt; thanks to Aaron for the help.	2010-03-10 21:00:41 +00:00
recalibration	Oops. Commented out some tests to improve performance and then checked in the commented out tests. Reverted.	2010-03-16 16:34:50 +00:00
sequenom	Hmm. I thought I removed this already.	2010-03-10 03:09:13 +00:00
varianteval	Moving UnifiedGenotyper and VariantAnnotator over to VariantContext system.	2010-03-09 03:41:07 +00:00
DepthOfCoverageIntegrationTest.java	CoverageStatistics has now replaced DepthOfCoverage -- old DoC is in the archive.	2010-04-01 16:27:23 +00:00
PileupWalkerIntegrationTest.java	Now that we changed how deletions are represented, got to update MD5...	2009-12-30 22:00:58 +00:00
PrintReadsWalkerTest.java	adding the initial ROD for Reads support; more convenience methods in ReadMetaDataTracker to come.	2010-03-03 15:56:44 +00:00
VariantsToVCFIntegrationTest.java	Moving VariantsToVCF to core.	2010-03-26 18:55:12 +00:00