hanna d773b3264b Eliminated -mrl option. ... Eliminated -fmq0 option. Eliminated read group hallucination. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4133 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-26 21:38:03 +00:00
..
alignment	Disabled AlignerIntegrationTest while addressing build machine memory issues.	2010-08-14 01:23:21 +00:00
commandline	The copyright tag that I copied/pasted from a LaTeX document into IntelliJ had	2010-04-20 15:26:32 +00:00
gatk	Eliminated -mrl option.	2010-08-26 21:38:03 +00:00
oneoffprojects/walkers	Update integration tests to use the new ROD syntax.	2010-08-25 18:13:30 +00:00
playground	Moving supported tools to core	2010-08-26 13:56:19 +00:00
utils	Modifications to the output system for better interaction with @Output. Multiplexed arguments. More details in the Monday meeting.	2010-08-22 14:27:05 +00:00
BaseTest.java	Moving pointer to b36 reference from /broad/1KG to /humgen/1kg	2010-08-13 00:54:34 +00:00
WalkerTest.java	remove testing code from tribble track builder, set the command line program in walker test to null to reclaim memory in integration tests, and removed some orphaned intergration tests.	2010-08-16 23:52:01 +00:00