hanna d773b3264b Eliminated -mrl option. ... Eliminated -fmq0 option. Eliminated read group hallucination. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4133 348d0f76-0448-11de-a6fe-93d51630548a		2010-08-26 21:38:03 +00:00
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net/sf/picard/reference	IndexedFastaSequenceFile is now in Picard; transitioning to that implementation.	2010-07-01 04:40:31 +00:00
org/broadinstitute/sting	Eliminated -mrl option.	2010-08-26 21:38:03 +00:00