gatk3的最后一个经典版本3.8
 
 
 
 
Go to file
Mark DePristo d74c46bbcb Convenient python script to update md5s in one go across all files
-- integration tests now write out mismatches file, which this script reads in, walks the file system to find files with these md5s, and updates them in the files.
-- Should be run like: python private/python/updateMD5s.py integrationtests/md5mismatches.txt public/java/test
-- Note that before using this code you should really commit your code for safety
-- Note also that you ***MUST*** review the differences before running this code.  It's not ok to just update md5s willy-nilly
-- Doc from the code:

    Update the MD5s across multiple files.

    The first argument is the database of MD5 updates produced automatically by the
    integrationtests, which lives in integrationtest/md5mismatches.txt.

    The second (and more) argument(s) is the path to the source directory containing the java / scala
    code with md5s to update.  This program crawls that directory looking for .java
    and .scala files to update, id's those with MD5s in the md5mismatches.txt files and
    updates these files.

    It is highly recommended that you commit your code before updating the MD5s to ensure
    that if things go wrong with this script that you don't lose any work.
2012-06-14 16:42:27 -04:00
licensing Remove old licensing 2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting build system overhaul 2012-05-17 15:16:29 -04:00
public MD5DB for integrationtest management now writes out a md5mismatches files for clean analysis 2012-06-14 16:42:27 -04:00
settings Testing of BCF codec 2012-05-24 10:57:01 -04:00
.gitignore Minor additions to the shared .gitignore file, now that Mark has checked one in. 2011-10-26 12:24:28 -04:00
build.xml ant fasttest: for when you just can't wait 2012-06-01 15:17:18 -04:00
ivy.xml Final updates to integration tests for BCF2 2012-05-24 10:58:59 -04:00