20 lines
558 B
R
Executable File
20 lines
558 B
R
Executable File
#!/bin/env Rscript
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args <- commandArgs(TRUE)
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verbose = TRUE
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input = args[1]
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annotationName = args[2]
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data = read.table(input,sep=",",head=T)
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outfile = paste(input, ".ClusterReport.pdf", sep="")
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pdf(outfile, height=7, width=8)
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maxP = max(data$knownDist, data$novelDist)
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plot(data$annotationValue, data$knownDist, ylim=c(0,maxP),type="b",col="orange",lwd=2,xlab=annotationName,ylab="fraction of SNPs")
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points(data$annotationValue, data$novelDist, type="b",col="blue",lwd=2)
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legend('topright', c('knowns','novels'),lwd=2,col=c("orange","blue"))
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dev.off()
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