Khalid Shakir b090751f62 Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths. ... Updates to HybridSelectionPipeline: - Added annotations back via snpEff - Minor updates to VQSR paths and lowered memory		2011-09-27 14:33:57 -04:00
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gatk	Fixed issue reported by chartl where cloned functions lost tags on @Inputs.	2011-09-16 12:46:07 -04:00
picard	BLASR BAMs and new BWA parameters	2011-08-24 17:04:07 -04:00
samtools	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
snpeff	Fixed Ant / PluginManager issue where reflections was picking up all class files under current working directory due to "." in jar manifest classpaths.	2011-09-27 14:33:57 -04:00