Mark DePristo d6e2e89f99 Walker test system refactoring. All MD5DB related functions are now in MD5DB.java. ... System has the concept of a local and a global MD5 db. The local one is like it operated previously. The global one lives in /humgen/gsa-hpprojects/GATK/data/integrationtests. If the system can find this directory then MD5s will also be read / written to this location. This means that gsabamboo will print differences as appropriate. And all users will in effect have access to a complete history of MD5 file results. A few minor code reshuffles changed VariantRecalibration and VCFHeader test files.		2011-07-18 10:46:01 -04:00
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broadinstitute/sting	Walker test system refactoring. All MD5DB related functions are now in MD5DB.java.	2011-07-18 10:46:01 -04:00