chartl d6a0b65ac9 Changes: ... Rollback of Variant-related changes of r1585, additional PGC code git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1586 348d0f76-0448-11de-a6fe-93d51630548a		2009-09-11 16:23:01 +00:00
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bwa	Higher-level readers and writers for BWTs and suffix arrays.	2009-09-09 22:45:32 +00:00
gatk	Changes:	2009-09-11 16:23:01 +00:00
playground	Changes:	2009-09-11 16:23:01 +00:00
secondarybase	Cleanup...deprecate FastaSequenceFile2 in favor of IndexedFastaSequenceFile or ReferenceSequenceFile from Picard, depending on the application.	2009-07-08 18:49:08 +00:00
utils	adding a basic implementation of the Variation interface.	2009-09-10 04:41:13 +00:00