gatk3的最后一个经典版本3.8

David Roazen d647ea4fdc Long-delayed change to CachingIndexedFastaSequenceFile. Made the cache ... non-static to avoid problems when multiple references are used within the same thread (eg., during integration tests). This should kill the intermittent IndelRealignerIntegrationTest failures.		2011-07-01 16:04:30 -04:00
public	Long-delayed change to CachingIndexedFastaSequenceFile. Made the cache	2011-07-01 16:04:30 -04:00
settings	Updated the tribble jar -- this should fix most of the integration test	2011-06-29 01:11:03 -04:00
LICENSE	One last test...	2011-06-28 19:18:17 -04:00
build.xml	Fixes to the packaging system to work with the new directory structure.	2011-06-30 18:27:17 -04:00
ivy.xml	A prototype script and library dependencies to extract a BAM list from a	2011-06-22 22:53:45 +00:00