hanna c63af32fc7 The BWA/C bindings were triggering the local aligner to repeatedly reload the ... ref genome. Make sure the reference genome is cached. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@1961 348d0f76-0448-11de-a6fe-93d51630548a		2009-11-03 00:01:55 +00:00
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bwa	The BWA/C bindings were triggering the local aligner to repeatedly reload the	2009-11-03 00:01:55 +00:00
Aligner.java	Unidirectional alignments with mismatches now working. Significant refactoring will be required.	2009-09-22 19:05:10 +00:00
Alignment.java	Initial version of BWA/C bindings. Still lots of squirrels roaming the code.	2009-10-28 21:37:49 +00:00