MauricioCarneiro 84861fa10a Merge pull request #587 from broadinstitute/eb_actually_fail_on_reduced_bams ... Make sure to fail in all cases where the BAM being used was created by ReduceReads.		2014-04-04 17:27:57 -04:00
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VectorPairHMM	Removed g_haplotype* global variables in native code so that it works	2014-03-06 22:08:35 -08:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs)	2013-03-12 10:57:14 -04:00
external-example	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
gatk-framework	Merge pull request #587 from broadinstitute/eb_actually_fail_on_reduced_bams	2014-04-04 17:27:57 -04:00
gatk-package	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
gatk-queue-extgen	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
gsalib	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
java/config	Moved files to maven directories.	2014-02-03 13:50:44 -05:00
package-tests	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
perl	Fixing the liftover script to not require strict VCF header validation.	2013-11-07 09:02:17 -05:00
queue-framework	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
queue-package	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
repo	Rev Picard 1.110.1773	2014-03-31 14:15:06 -04:00
sting-root	Rev Picard 1.110.1773	2014-03-31 14:15:06 -04:00
sting-utils	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.2 development	2014-03-18 01:18:59 -04:00