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David Roazen d5e38ec39b Move GATKRunReport tests from private to public 
-Hide AWS downloader credentials in a private properties file
-Remove references to private ActiveRegion walker

Allows phone home functionality to be tested at release time
when we are running tests on the release jar.
 		2014-03-17 18:29:40 -04:00
..
VectorPairHMM Removed g_haplotype* global variables in native code so that it works 2014-03-06 22:08:35 -08:00
c At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings. 2012-01-17 14:47:53 -05:00
chainFiles
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doc Fixed issues raised by Appistry QA (mostly small fixes, corrections & clarifications to GATKDocs) 2013-03-12 10:57:14 -04:00
external-example Update pom versions to mark the start of GATK 3.1 development 2014-03-06 00:05:58 -05:00
gatk-framework Move GATKRunReport tests from private to public 2014-03-17 18:29:40 -04:00
gatk-package Unconditionally include all of commons-httpclient in the GATK/Queue jars 2014-03-14 10:50:15 -04:00
gatk-queue-extgen Update pom versions to mark the start of GATK 3.1 development 2014-03-06 00:05:58 -05:00
gsalib Update pom versions to mark the start of GATK 3.1 development 2014-03-06 00:05:58 -05:00
java/config Moved files to maven directories. 2014-02-03 13:50:44 -05:00
package-tests Updated package-tests classpath, and allowing javac -cp <package>.jar. 2014-03-17 05:47:59 -04:00
perl Fixing the liftover script to not require strict VCF header validation. 2013-11-07 09:02:17 -05:00
queue-framework Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests 2014-03-10 21:24:03 -04:00
queue-package Unconditionally include all of commons-httpclient in the GATK/Queue jars 2014-03-14 10:50:15 -04:00
repo GATK changes to conform to Tribble refactoring as part improving Tabix support in Tribble (among other things). 2014-03-17 11:56:22 -04:00
sting-root GATK changes to conform to Tribble refactoring as part improving Tabix support in Tribble (among other things). 2014-03-17 11:56:22 -04:00
sting-utils Merge remote-tracking branch 'origin/master' into intel 2014-03-10 14:07:36 -04:00
pom.xml Rename existing PipelineTests to QueueTests to prepare for upcoming push of new pipeline tests 2014-03-10 21:24:03 -04:00