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gatk-3.8/scala/src/org/broadinstitute/sting/queue
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kshakir d5ac822e97 When @Gather annotation is missing (probably due to an unclean build) printing out the full field+class name for debugging purposes. 
Custom gatherer prints out the class name in the logs.
Try to retrieve mail domain from /etc/mailname before falling back to the hostname.
Building oneoff jars during ant oneoffs.


git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5540 348d0f76-0448-11de-a6fe-93d51630548a
 		2011-03-30 21:43:37 +00:00
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engine When @Gather annotation is missing (probably due to an unclean build) printing out the full field+class name for debugging purposes. 2011-03-30 21:43:37 +00:00
extensions Fixed RodBind with tag order. 2011-03-29 14:47:26 +00:00
function When @Gather annotation is missing (probably due to an unclean build) printing out the full field+class name for debugging purposes. 2011-03-30 21:43:37 +00:00
library Fix for expanded intervals in the case where the input file has overlapping intervals in it (seriously?) 2011-02-28 19:56:33 +00:00
pipeline Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
util When @Gather annotation is missing (probably due to an unclean build) printing out the full field+class name for debugging purposes. 2011-03-30 21:43:37 +00:00
QCommandLine.scala Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
QException.scala Fix for Queue 2010-09-12 15:18:08 +00:00
QScript.scala Walkers can now specify a class extending from Gatherer to merge custom output formats. Add @Gather(MyGatherer.class) to the walker @Output. 2011-03-24 14:03:51 +00:00
QScriptManager.scala Due to recent LSF hiccups put a very brief (.5-2min) retry around getting status. Can't wait too long because statuses are archived an hour after exit. 2011-02-23 18:59:08 +00:00
QSettings.scala When host name lookup fails just use the whole internet address instead of truncating to the last two octets of the IP address. 2011-03-25 18:18:22 +00:00