chartl 328f89f66a Minor changes to MannWhitneyU: ... - Comment fixes to better explain why two-sided test wants to use the LOWER (not higher) value for U - Much more direct testing of MWU functions - Uniform approximation was always using the < cumulant (sometimes the > cumulant should be used instead) - Uniform approximation currently not used (regime in which it was being used was not the right one -- not necessarily bad, but not an improvement over normal) + this particular approximation is for major imbalances of the form m >> n. Code may be altered in the future to use this method for this particular regime, if the method's not too slow. - Hook into one-sided test. RegionalAssociationRecalibrator: NaNs were being caused by presence of Infinity and -Infinity values out of the walker. Currently I'm just re-setting them to arbitrary post-whitened values, but the walker will be changed to prevent output of these values, and the "fix" will undone. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5539 348d0f76-0448-11de-a6fe-93d51630548a		2011-03-30 17:03:02 +00:00
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net/sf/picard/reference	A few minor modifications masquerading as significant changes according to	2011-02-03 17:59:19 +00:00
org/broadinstitute/sting	Minor changes to MannWhitneyU:	2011-03-30 17:03:02 +00:00