gatk3的最后一个经典版本3.8

aaron d56193b6df Cleanup of a couple of output statements ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@343 348d0f76-0448-11de-a6fe-93d51630548a		2009-04-09 14:09:07 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Updated with last week / next week for 6 April.	2009-04-06 14:05:20 +00:00
java	Cleanup of a couple of output statements	2009-04-09 14:09:07 +00:00
python	The system now requires a dictionary file for a fasta file, or it throws an error. You can't just operate without a sequence dictionary any longer. We will transition to a GenomeLoc system that assumes a dictionary is available.	2009-04-07 22:21:57 +00:00
settings	Bump sam jdk to svn rev 207.	2009-04-08 22:16:46 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Bump sam jdk to svn rev 207.	2009-04-08 22:16:46 +00:00
ivy.xml	Added castor dependency.	2009-04-07 22:27:39 +00:00