Mark DePristo 5f34054cc1 Remove filtering of MAPQ 0 reads from CalledHaplotypeBAMWriter		2013-07-02 15:46:49 -04:00
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src/org/broadinstitute/sting	Remove filtering of MAPQ 0 reads from CalledHaplotypeBAMWriter	2013-07-02 15:46:49 -04:00
test/org/broadinstitute/sting	Working version of HaplotypeCaller ReferenceConfidenceModel that accounts for indels as well as SNP confidences	2013-07-02 15:46:38 -04:00