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Mark DePristo 5f34054cc1 Remove filtering of MAPQ 0 reads from CalledHaplotypeBAMWriter 2013-07-02 15:46:49 -04:00
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java Remove filtering of MAPQ 0 reads from CalledHaplotypeBAMWriter 2013-07-02 15:46:49 -04:00
scala/test/org/broadinstitute/sting/queue/pipeline/examples Fix improper dependencies in QScripts used by pipeline tests, and attempt to fix the flawed MisencodedBaseQualityUnitTest 2013-02-27 04:45:53 -05:00