Karthik Gururaj f1c772ceea Same log message as before - forgot -a option ... 1. Moved computeLikelihoods from PairHMM to native implementation 2. Disabled debug - debug code still left (hopefully, not part of bytecode) 3. Added directory PairHMM_JNI in the root which holds the C++ library that contains the PairHMM AVX implementation. See PairHMM_JNI/JNI_README first		2014-01-16 21:40:04 -08:00
..
config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Same log message as before - forgot -a option	2014-01-16 21:40:04 -08:00
test	Write a new tool for spliting reads that have N cigar string.	2014-01-01 22:21:36 -05:00