Karthik Gururaj f1c772ceea Same log message as before - forgot -a option ... 1. Moved computeLikelihoods from PairHMM to native implementation 2. Disabled debug - debug code still left (hopefully, not part of bytecode) 3. Added directory PairHMM_JNI in the root which holds the C++ library that contains the PairHMM AVX implementation. See PairHMM_JNI/JNI_README first		2014-01-16 21:40:04 -08:00
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src/org/broadinstitute/sting	Same log message as before - forgot -a option	2014-01-16 21:40:04 -08:00
test/org/broadinstitute/sting	Allow for additional input data to be used in the VQSR for clustering but don't carry it forward into the output VCF file.	2014-01-02 14:46:04 -05:00