zzh
/
gatk-3.8
1
0
Fork 0
Code Issues Pull Requests Packages Projects Releases Wiki Activity
gatk-3.8/PairHMM_JNI
History
Karthik Gururaj f1c772ceea Same log message as before - forgot -a option 
1. Moved computeLikelihoods from PairHMM to native implementation
2. Disabled debug - debug code still left (hopefully, not part of
    bytecode)
3. Added directory PairHMM_JNI in the root which holds the C++
library that contains the PairHMM AVX implementation. See
PairHMM_JNI/JNI_README first
 		2014-01-16 21:40:04 -08:00
..
.gitignore Same log message as before - forgot -a option 2014-01-16 21:40:04 -08:00
JNI_README Same log message as before - forgot -a option 2014-01-16 21:40:04 -08:00
Makefile Renamed directory 2014-01-16 20:28:50 -08:00
convert_char.cc Renamed directory 2014-01-16 20:28:50 -08:00
define-double.h Renamed directory 2014-01-16 20:28:50 -08:00
define-float.h Renamed directory 2014-01-16 20:28:50 -08:00
hmm_mask.cc Renamed directory 2014-01-16 20:28:50 -08:00
libJNILoglessPairHMM.so Same log message as before - forgot -a option 2014-01-16 21:40:04 -08:00
org_broadinstitute_sting_utils_pairhmm_JNILoglessPairHMM.cc Same log message as before - forgot -a option 2014-01-16 21:40:04 -08:00
org_broadinstitute_sting_utils_pairhmm_JNILoglessPairHMM.h Renamed directory 2014-01-16 20:28:50 -08:00
pairhmm-1-base.cc Renamed directory 2014-01-16 20:28:50 -08:00
pairhmm-template-kernel.cc Renamed directory 2014-01-16 20:28:50 -08:00
pairhmm-template-main.cc Renamed directory 2014-01-16 20:28:50 -08:00
run.sh 1. Moved computeLikelihoods from PairHMM to native implementation 2014-01-16 21:36:15 -08:00
shift_template.c Renamed directory 2014-01-16 20:28:50 -08:00
template.h Renamed directory 2014-01-16 20:28:50 -08:00