kshakir 01b721ab61 Passing ReviewedStingExceptions through the HMS. ... Added a @Hidden experimental argument -validate to VariantEval that allows external JEXL assertions that must evaluate to true will throw an exception. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@4692 348d0f76-0448-11de-a6fe-93d51630548a		2010-11-16 21:50:42 +00:00
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annotator	When you commit code late at night you tend to make careless mistakes... like forgetting to update integration tests.	2010-11-12 14:41:10 +00:00
beagle	When you commit code late at night you tend to make careless mistakes... like forgetting to update integration tests.	2010-11-12 14:41:10 +00:00
coverage	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
fasta	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
filters	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
genotyper	Better precision for the calculated AF value. Now looks at the total number of samples to determine how much precision is necessary. Also, changing default min BQ used for calling in UGv2 to Q17.	2010-11-12 08:31:40 +00:00
indels	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
phasing	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
qc	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
recalibration	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
sequenom	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
varianteval	Passing ReviewedStingExceptions through the HMS.	2010-11-16 21:50:42 +00:00
variantrecalibration	- Reintroduce test dependency so that the tests passing / failing is not	2010-11-16 19:55:20 +00:00
variantutils	When you commit code late at night you tend to make careless mistakes... like forgetting to update integration tests.	2010-11-12 14:41:10 +00:00
ClipReadsWalkersIntegrationTest.java	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
PileupWalkerIntegrationTest.java	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
PrintReadsWalkerUnitTest.java	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00
VariantsToVCFIntegrationTest.java	Changing testing framework from junit -> testng, for its enhanced configurability.	2010-11-01 21:31:44 +00:00