chartl 886c44303a -Removing BTTJ integration test -- this broke a few revisions ago (2169) and it is unclear whether the resulting change was a correction to something that had previously been incorrect, or a true build-breaker. I'm currently investigating which case this is, but since Bamboo is back up I'm removing this _temporarily_ so that other testing can occur, and will make whatever changes to the test necessary to reflect the truth, then replace the test itself. Additional (and related) pileup tests are upcoming as well. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@2210 348d0f76-0448-11de-a6fe-93d51630548a		2009-12-02 05:37:15 +00:00
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varianteval	Thanks to Steve Hershman for finding this bug:	2009-12-02 01:59:03 +00:00
variantstovcf	changes to VCF output, and updated MD5's in the integration tests	2009-10-14 18:42:48 +00:00
ClipReadsWalkersIntegrationTest.java	Softclipping support in clip reads walker. Minor improvement to WalkerTest -- now can specify file extensions for tmp files. Matt -- I couldn't easily create non-presorted SAM file. The softclipper has an impact on this.	2009-10-19 21:54:53 +00:00
ConcordanceTruthTableTest.java	adding an extra bit of data to come out of CTT (number of chips with actual data)	2009-11-19 17:46:10 +00:00
HapmapPoolAllelicInfoIntegrationTest.java	oops forgot to update the md5s	2009-11-19 18:22:29 +00:00