Mark DePristo d471617c65 GATK binary VCF (gvcf) prototype format for efficiency testing ... -- Very minimal working version that can read / write binary VCFs with genotypes -- Already 10x faster for sites, 5x for fully parsed genotypes, and 1000x for skipping genotypes when reading		2011-09-02 21:15:19 -04:00
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R	queueJobReport is a public feature of Queue	2011-08-29 17:20:54 -04:00
c	Reinitialize random seed in the bwa bindings from the fixed seed stored in the	2011-07-22 13:41:53 -04:00
chainFiles	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
doc	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
java	GATK binary VCF (gvcf) prototype format for efficiency testing	2011-09-02 21:15:19 -04:00
packages	Added edu.mit.broad.picard to Queue packaged jar.	2011-07-23 14:40:29 -04:00
perl	Moving these supported perl scripts to public	2011-07-01 17:26:25 -04:00
scala	Default jobreport is now jobPrefix, so you see logs like Q-2508.jobreport.txt	2011-08-28 19:19:45 -04:00
testdata	GZIP VCF for testing	2011-08-19 09:05:39 -04:00