depristo d457778283 Unified byLoci and byLociByInterval traversals. It now figures out what to do for you based on the presence of an index and set of required locations to process. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@191 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-25 16:01:58 +00:00
..
iterators	Support for byInterval traversals for Jared. Do not use them.	2009-03-24 20:55:34 +00:00
refdata	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
walkers	added slightly more useful output to Depth of Coverage walker. (now prints number of loci). Traversal engine now actually prints the reduce result (key) and no longer prints millions of locus interval updates	2009-03-25 03:12:54 +00:00
GenomeAnalysisTK.java	Unified byLoci and byLociByInterval traversals. It now figures out what to do for you based on the presence of an index and set of required locations to process.	2009-03-25 16:01:58 +00:00
LocusContext.java	Push core / playground lower into the tree.	2009-03-23 23:19:54 +00:00
TraversalEngine.java	Unified byLoci and byLociByInterval traversals. It now figures out what to do for you based on the presence of an index and set of required locations to process.	2009-03-25 16:01:58 +00:00
WalkerManager.java	Prototype, buggy implementation of walker command-line arguments. Doesn't	2009-03-25 00:12:00 +00:00