depristo d457778283 Unified byLoci and byLociByInterval traversals. It now figures out what to do for you based on the presence of an index and set of required locations to process. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@191 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-25 16:01:58 +00:00
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src/org/broadinstitute/sting	Unified byLoci and byLociByInterval traversals. It now figures out what to do for you based on the presence of an index and set of required locations to process.	2009-03-25 16:01:58 +00:00
test/org/broadinstitute/sting/utils/cmdLine	added our first junit test, for the argument parser	2009-03-24 21:14:30 +00:00