gatk3的最后一个经典版本3.8

depristo d457778283 Unified byLoci and byLociByInterval traversals. It now figures out what to do for you based on the presence of an index and set of required locations to process. ... git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@191 348d0f76-0448-11de-a6fe-93d51630548a		2009-03-25 16:01:58 +00:00
c	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
doc	Changed how the example walker gets run, I'm about to check in the GNU style command line args.	2009-03-22 20:10:17 +00:00
java	Unified byLoci and byLociByInterval traversals. It now figures out what to do for you based on the presence of an index and set of required locations to process.	2009-03-25 16:01:58 +00:00
python	Added Hapmap data track (using rodGFF class for GFF file format) to toolkit as a command line option, Hapmap metrics to AlleleFrequencyMetricsWalker, and a python Geli2GFF file converter.	2009-03-24 03:58:03 +00:00
settings	Update picard to work with new samtools.	2009-03-20 21:51:26 +00:00
shell	Move non-java code out of playground.	2009-03-23 19:31:38 +00:00
testdata	Skeleton of new directory structure.	2009-03-11 20:05:05 +00:00
build.xml	Prototype, buggy implementation of walker command-line arguments. Doesn't	2009-03-25 00:12:00 +00:00
ivy.xml	Prototype, buggy implementation of walker command-line arguments. Doesn't	2009-03-25 00:12:00 +00:00