Yossi Farjoun d419a33ed1 * Added an integration test for AD annotation in the Haplotype caller. ... * Corrected FS Anotation for UG as for AD. * HC still does not annotate ReducedReads correctly (for FS nor AD)		2012-10-05 15:23:59 -04:00
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bqsr	updating BQSR integration tests	2012-09-19 14:10:34 -04:00
compression/reducereads	Refactored the BaseCounts classes so that they are safer and allow for calculations on the most probable base (which is not necessarily the most common base).	2012-10-04 10:37:11 -04:00
genotyper	Copied DiploidExactAFCalc to placeholder OptimizedDiploidExact	2012-10-03 20:16:38 -07:00
haplotypecaller	* Added an integration test for AD annotation in the Haplotype caller.	2012-10-05 15:23:59 -04:00