Eric Banks d3f2bc4361 Pre-allocate 10 alt alleles worth of PLs in the cache for efficiency. This effectively means that we never need to re-allocate the cache in the future because we can't ever really handle that many alt alleles.		2012-03-23 13:51:00 -04:00
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R	Now converts gatkreports to properly typed R data types in gsa.read.gatkreport	2012-03-02 09:11:59 -05:00
c	At chartl's request, add the bwa aln -N and bwa aln -m parameters to the bindings.	2012-01-17 14:47:53 -05:00
chainFiles	…
doc	…
java	Pre-allocate 10 alt alleles worth of PLs in the cache for efficiency. This effectively means that we never need to re-allocate the cache in the future because we can't ever really handle that many alt alleles.	2012-03-23 13:51:00 -04:00
keys	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
packages	Public-key authorization scheme to restrict use of NO_ET	2012-03-06 00:09:43 -05:00
perl	…
scala	Mostly small changes to my own scala scripts: .vcf.gz compatibility for output files, smarter beagle generation, simple script to scatter-gather combine variants. Whole genome indel calling now uses the gold standard indel set.	2012-02-22 17:20:04 -05:00
testdata	Added support for breakpoint alleles	2012-02-23 12:14:48 -05:00