gatk-3.8/protected
Eric Banks d3f06024f8 Updated the physical phasing in the Haplotype Caller to address requests from ATGU.
1. It is now turned on by default
2. It now phases homozygous variants
3. Most importantly, it also phases variants that are always on opposite haplotypes

Changed the INFO keys to be PID and PGT, as described in the header.
2014-08-18 14:38:29 -04:00
..
gatk-package-distribution Update pom versions to mark the start of GATK 3.3 development 2014-07-17 12:09:33 -04:00
gatk-queue-extensions-distribution Update pom versions to mark the start of GATK 3.3 development 2014-07-17 12:09:33 -04:00
gatk-queue-package-distribution Update pom versions to mark the start of GATK 3.3 development 2014-07-17 12:09:33 -04:00
gatk-tools-protected Updated the physical phasing in the Haplotype Caller to address requests from ATGU. 2014-08-18 14:38:29 -04:00
pom.xml Update pom versions to mark the start of GATK 3.3 development 2014-07-17 12:09:33 -04:00