gatk3的最后一个经典版本3.8

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Eric Banks d3f06024f8 Updated the physical phasing in the Haplotype Caller to address requests from ATGU. 1. It is now turned on by default 2. It now phases homozygous variants 3. Most importantly, it also phases variants that are always on opposite haplotypes Changed the INFO keys to be PID and PGT, as described in the header.		2014-08-18 14:38:29 -04:00
licensing	deleted old license files	2013-07-02 16:36:47 -04:00
protected	Updated the physical phasing in the Haplotype Caller to address requests from ATGU.	2014-08-18 14:38:29 -04:00
public	Update the --keepOriginalAC functionality in SelectVariants to work for sites that lose alleles in the selection.	2014-08-14 15:34:09 -04:00
settings/helpTemplates	Various documentation improvements	2014-07-14 12:03:03 -04:00
.gitignore	Fixed bug using GraphBased due to infinite likelihoods resulting from the calculation of alignment cost of very long insertion or deletions (done in linear scale)	2014-04-01 16:14:52 -04:00
README.md	Update README file for the 2.6 release	2013-06-20 13:08:29 -04:00
ant-bridge.sh	Refactored maven directories and java packages replacing "sting" with "gatk".	2014-05-19 17:36:39 -04:00
intellij_example.tar.bz2	Removed the intellij files from the root and made an example package for new users. This allows users to start at the same page and then change it as they see fit without interfering with the repo (thanks guillermo!)	2012-09-27 11:04:56 -04:00
pom.xml	Update pom versions to mark the start of GATK 3.3 development	2014-07-17 12:09:33 -04:00

README.md

The Genome Analysis Toolkit

See http://www.broadinstitute.org/gatk/