Eric Banks d3baa4b8ca Have Haplotype extend the Allele class. ... This way, we don't need to create a new Allele for every read/Haplotype pair to be placed in the PerReadAlleleLikelihoodMap (very inefficient). Also, now we can easily get the Haplotype associated with the best allele for a given read.		2013-01-15 11:36:20 -05:00
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config	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
src	Have Haplotype extend the Allele class.	2013-01-15 11:36:20 -05:00
test	Add a test to LocusIteratorByState to ensure that we aren't holding reads anywhere	2013-01-14 16:30:16 -05:00