Eric Banks 94800771e3 1. Initial implementation of bam writing for the HaplotypeCaller with -bam argument; currently only assembled haplotypes are emitted. ... 2. Framework is set up in the VariantAnnotator for the HaplotypeCaller to be able to call in to annotate dbSNP plus comp RODs. Until the HC uses meta data though, this won't work.		2013-01-15 10:19:18 -05:00
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annotator	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
beagle	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
bqsr	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
compression/reducereads	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
diagnostics	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
diffengine	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
fasta	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
filters	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
genotyper	Updating MD5s in HC and UG that changed due to new LIBS	2013-01-11 15:17:19 -05:00
haplotypecaller	1. Initial implementation of bam writing for the HaplotypeCaller with -bam argument; currently only assembled haplotypes are emitted.	2013-01-15 10:19:18 -05:00
indels	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
phasing	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
validation	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
varianteval	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
variantrecalibration	Updated all JAVA file licenses accordingly	2013-01-10 17:06:41 -05:00
variantutils	Merge branch 'master' of gsa2:/humgen/gsa-scr1/chartl/dev/unstable	2013-01-14 13:27:34 -05:00