gatk3的最后一个经典版本3.8

Christopher Hartl d366cce714 Initial commit of a burden testing framework. Currently tests against only one phenotype and only one weighting function, but computes robust weighted dosages and calls into an R script that calculates both a direct glm LRT and an asymptotic normal p-values. Weights currently read in from external file (beta-values). Future work is to let these be calculated on the fly from e.g. annotation, potential impact, conservation, etc, and enable multiple weighting schemes tested jointly for association against multiple phenotypes.		2012-05-21 16:56:32 -04:00
licensing	Remove old licensing	2012-04-25 12:23:08 -04:00
protected/java/src/org/broadinstitute/sting	build system overhaul	2012-05-17 15:16:29 -04:00
public	Merge branch 'master' of ssh://nickel.broadinstitute.org/humgen/gsa-scr1/gsa-engineering/git/unstable	2012-05-21 16:47:07 -04:00
settings	Rev. tribble to v101 with another putative open file leak fix	2012-05-04 15:40:41 -04:00
.gitignore	Minor additions to the shared .gitignore file, now that Mark has checked one in.	2011-10-26 12:24:28 -04:00
build.xml	build system overhaul	2012-05-17 15:16:29 -04:00
ivy.xml	build system overhaul	2012-05-17 15:16:29 -04:00