carneiro 5f10fffa47 merge intervals now prints a sorted list in the end. ... added the ccs datasets to the pbCalling pipeline. git-svn-id: file:///humgen/gsa-scr1/gsa-engineering/svn_contents/trunk@5233 348d0f76-0448-11de-a6fe-93d51630548a		2011-02-11 20:57:59 +00:00
..
carneiro	merge intervals now prints a sorted list in the end.	2011-02-11 20:57:59 +00:00
chartl	Fixing import GenotypeCalculationModel since it doesn't exist anymore.	2011-02-02 15:39:43 +00:00
delangel	Script for calling indels in all phase 1 samples - VQSR part still needs work but raw calling is done	2011-01-22 14:07:10 +00:00
depristo	Removing unused class	2011-02-04 22:22:28 +00:00
fromer	Updated DoC to work with scatter-gather; and, also manually implemented scatter-gather by sample above the scatter-gather by interval. Thansk to Khalid for his support!	2011-02-11 19:14:42 +00:00
hanna	Refactoring the qscript directory; oneoffs, playground, and core	2011-01-19 15:23:40 +00:00
kshakir	Removed deprecated getDbsnpFile.	2011-02-08 21:12:15 +00:00
rpoplin	Following Ryan's suggestion, I am moving the Methods Development Calling pipeline to the Core.	2011-02-10 17:36:05 +00:00
QTools.q	Bug fixes in the in process function (spoiled by python: was not closing my writers). SortByRef now works somewhat like the perl script does, rather than doing a memory-expensive sort. Adding a QTools qscript which is kinda clunky, and will be used mostly for integration tests of these IPFs, pending some better way to construct argument collections and function accessors at compile-time.	2011-02-03 17:32:46 +00:00