David Roazen d2f3d6d22f Revert "Separated out the DoC calculations from the XHMM pipeline, so that CalcDepthOfCoverage can be used for calculating joint coverage on a per-base accounting over multiple samples (e.g., family samples)" ... This reverts commit 075c56060e0ffcce39631693ef39cf5f8c3a4d5a.		2012-09-10 15:52:39 -04:00
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AlignmentUtilsUnitTest.java	Bug fix for: https://getsatisfaction.com/gsa/topics/problem_with_indelrealigner_and_l_unmapped	2012-04-27 09:58:38 -04:00
ArtificialPatternedSAMIteratorUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ArtificialSAMFileWriterUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ArtificialSAMQueryIteratorUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ArtificialSAMUtilsUnitTest.java	Reorganized the codebase beneath top-level public and private directories,	2011-06-28 06:55:19 -04:00
ArtificialSingleSampleReadStreamUnitTest.java	Revert "Separated out the DoC calculations from the XHMM pipeline, so that CalcDepthOfCoverage can be used for calculating joint coverage on a per-base accounting over multiple samples (e.g., family samples)"	2012-09-10 15:52:39 -04:00
GATKSAMRecordUnitTest.java	BitSet implementation of the on-the-fly recalibration using the CSV format file.	2012-03-16 13:02:15 -04:00
ReadUtilsUnitTest.java	Unit tests for GATKSAMRecord class	2012-01-26 17:06:36 -05:00