David Roazen d2f3d6d22f Revert "Separated out the DoC calculations from the XHMM pipeline, so that CalcDepthOfCoverage can be used for calculating joint coverage on a per-base accounting over multiple samples (e.g., family samples)" ... This reverts commit 075c56060e0ffcce39631693ef39cf5f8c3a4d5a.		2012-09-10 15:52:39 -04:00
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ArgumentMatchSiteUnitTest.java	Added ability to specify arguments in files via -args/--arg_file	2011-10-24 15:58:34 -04:00
ArgumentMatchSourceUnitTest.java	Added ability to specify arguments in files via -args/--arg_file	2011-10-24 15:58:34 -04:00
InvalidArgumentIntegrationTest.java	Revert "Separated out the DoC calculations from the XHMM pipeline, so that CalcDepthOfCoverage can be used for calculating joint coverage on a per-base accounting over multiple samples (e.g., family samples)"	2012-09-10 15:52:39 -04:00
ParsingEngineUnitTest.java	Cleanup of VCF header lines and constants, BCF2 bugfixes	2012-06-21 15:16:31 -04:00
RodBindingUnitTest.java	Adding missing import	2011-08-04 21:57:00 -04:00