Mauricio Carneiro ee31a54a03 Merged bug fix from Stable into Unstable		2012-09-19 16:09:45 -04:00
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bqsr	updating BQSR integration tests	2012-09-19 14:10:34 -04:00
compression/reducereads	Fixed ReduceReads bug where variant regions were missing.	2012-09-19 16:09:08 -04:00
genotyper	Update general ploidy md5's due to bad merge of md5's in previous commit, and new shortened interval definition for EMIT_ALL_CONFIDENT_SITES was buggy	2012-09-18 20:12:15 -04:00
haplotypecaller	Adding HC integration test for _structural_ insertions and deletions.	2012-09-12 12:23:00 -04:00