Joseph Rose d2860a5486 Adding a representation of the hierarchy of flags output by snpEff (Yossi) and a stratifier whose output states are coding regions, genes, stop_gain, stop_lost and splice sites, all determined by the snpEff hierarchy (J. Rose)		2013-07-30 15:38:32 -04:00
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src/org/broadinstitute/sting	Added note of caution to VQSR gatkdocs for option BOTH of recalibration mode	2013-07-26 15:51:29 -04:00
test/org/broadinstitute/sting	Adding a representation of the hierarchy of flags output by snpEff (Yossi) and a stratifier whose output states are coding regions, genes, stop_gain, stop_lost and splice sites, all determined by the snpEff hierarchy (J. Rose)	2013-07-30 15:38:32 -04:00